FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19358974
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG719550.3716880863624281No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA479560.24771973969281635No Hit
CAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCGGC456430.23577179245139746No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC438130.2263188121436601No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT372360.19234490422891212No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA333400.1722198707431499No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG327960.16940980446587717No Hit
TTGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT315930.163195632165217No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC298780.15433669160359428No Hit
TTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGC297050.15344304920291746No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT291250.1504470226572958No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG274620.14185669137217705No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC274020.1415467575915955No Hit
GCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG230650.11914371081855887No Hit
CAGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGA229030.11830688961098869No Hit
GCTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCT198980.10278437276686256No Hit
GTAGGCCTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGA198720.10265006812861052No Hit
TTTCCTCTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGA194510.10047536610152998No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)