EGAF00004852617 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004852617
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13239208
Sequences flagged as poor quality	0
Sequence length	151
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC	66759	0.5042522181085153	No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC	31218	0.23579960372251876	No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC	29859	0.22553463923219574	No Hit
GCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCATTATGCAGAAG	15988	0.12076251086923025	No Hit
GTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGT	15415	0.11643445740863048	No Hit
GGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCTTTCCCTT	14736	0.11130575182442938	No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC	14077	0.1063281126786436	No Hit
GTTTCAATTTCTATCGCCTATACTTTATTTGGGTAAATGGTTTGGTTAAG	13768	0.10399413620512649	No Hit
GTCTGGTTTCGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTA	13419	0.10135802685477863	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTCTC	13380	86.952126	2
AGTCTCT	13380	86.772064	1
TCTGATG	9800	85.094246	1
CTGATGG	22335	78.302315	1
GGCTCAA	23050	75.78893	6
TCTCTCA	15440	75.3971	3
GATGGCT	23735	72.71542	3
GCTCAAA	24100	72.61684	7
CTCAAAC	24385	71.980865	8
TCAAACA	25140	69.84877	9
TGATGGC	28010	62.187336	2
CAGCTGG	19625	60.43919	8
CTCAGCT	20100	58.35017	6
CTCTCAG	24415	48.483326	4
TCTCAGC	25020	47.282177	5
AGCTGGT	26590	45.01722	9
ATGGCTC	45215	38.828854	4
TGGCTCA	52795	34.38002	5
TCAGCTG	40225	29.683468	7
CGTTTGC	1490	29.189365	6