Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004852864 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56984273 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT | 59429 | 0.10429017844976281 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACCGCG | 15390 | 0.0 | 19.425688 | 5 |
ACCGCGT | 15450 | 0.0 | 19.366194 | 6 |
GAACGAT | 15660 | 0.0 | 19.147388 | 45 |
AGACCGC | 15680 | 0.0 | 19.109486 | 4 |
CCGCGTT | 16520 | 0.0 | 18.125463 | 7 |
CGCGTTC | 16955 | 0.0 | 17.633898 | 8 |
CAGACCG | 17665 | 0.0 | 17.178816 | 3 |
AACGCTA | 8750 | 0.0 | 16.713785 | 23 |
ACGCTAC | 8840 | 0.0 | 16.594526 | 24 |
ATACGGA | 19420 | 0.0 | 15.513346 | 33 |
AATACGG | 19585 | 0.0 | 15.359685 | 32 |
CGCTACC | 9545 | 0.0 | 15.32213 | 25 |
TACGGAG | 19685 | 0.0 | 15.315664 | 34 |
AGAACGA | 20165 | 0.0 | 15.128091 | 44 |
TCAGACC | 21400 | 0.0 | 14.653936 | 2 |
GTCGGTT | 4795 | 0.0 | 14.605053 | 1 |
CAATACG | 21005 | 0.0 | 14.417869 | 31 |
GTCCGTT | 4690 | 0.0 | 14.25985 | 1 |
AAGAACG | 21635 | 0.0 | 14.007075 | 43 |
CCCGTAT | 3710 | 0.0 | 13.838604 | 1 |