FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004852872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51209606
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1222560.23873645893702053No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT559900.10933495563312867No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA524460.10241437905224265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)