Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004852885 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 56419056 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCTTAG | 18770 | 0.0 | 14.062353 | 45 |
GGCATAG | 20540 | 0.0 | 12.536628 | 35 |
ATAGGGG | 21155 | 0.0 | 12.466463 | 38 |
GGAGGTC | 29375 | 0.0 | 12.379977 | 4 |
GTTGTCG | 3195 | 0.0 | 12.234426 | 26 |
GGGAGGT | 31850 | 0.0 | 12.059761 | 3 |
ACCCGGC | 8465 | 0.0 | 11.595555 | 5 |
GAGCTTA | 23285 | 0.0 | 11.26817 | 44 |
TGGCATA | 23535 | 0.0 | 11.18938 | 34 |
ACGGACA | 8960 | 0.0 | 10.982641 | 18 |
CATAGGG | 23980 | 0.0 | 10.9367895 | 37 |
TCACCCG | 9770 | 0.0 | 10.575851 | 3 |
GCATAGG | 25380 | 0.0 | 10.315716 | 36 |
ACTCTCC | 35230 | 0.0 | 10.073579 | 11 |
CGGACAC | 9755 | 0.0 | 10.039891 | 13 |
CCGGACA | 10450 | 0.0 | 9.694448 | 12 |
GGTCACT | 36715 | 0.0 | 9.652394 | 7 |
TAGGGGA | 36310 | 0.0 | 9.643123 | 39 |
GTCACTC | 37510 | 0.0 | 9.63876 | 8 |
CGGCCCG | 11140 | 0.0 | 9.353521 | 8 |