FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004852915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004852915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51500644
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG132550.015.01067638
GGCATAG136350.014.52660535
AGCTTAG144200.013.53550945
CATAGGG152500.012.89939437
GCATAGG160650.012.37091436
GGGAGGT236950.012.1988173
TGGCATA165200.012.11218334
GTTGTCG27700.012.02288326
GAGCTTA172600.011.64703444
GGAGGTC240700.011.5049014
GTCACTC237700.011.3505228
ACTCTCC240800.011.17651711
GGTCACT247050.010.6458067
TAGGGGA243150.010.54303739
GAGGTCA275750.010.1478275
CGCGTTC26600.09.81556914
AGGTCAC284250.09.8049016
CACTCTC282100.09.58277610
CCGCGTT28300.09.54366913
TCACTCT293000.09.5225969
Produced by FastQC (version 0.11.5)