FastQCFastQC Report
Thu 9 May 2024
EGAF00004853120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004853120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49716287
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC943520.18978086597657623No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT913790.18380093428940097No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG672450.1352574861433236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)