FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004853990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004853990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45916682
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTC1828830.39829315193114345No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATTC1191920.259583216400523No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCAA631860.1376101173860951No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTA515590.11228816576946915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)