FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004854211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004854211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146578806
Sequences flagged as poor quality0
Sequence length126
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11747280.8014310063352542No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC4929260.33628736203513626TruSeq Adapter, Index 2 (100% over 50bp)
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT1527300.10419650982830356No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG1511040.10308720893796883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)