FastQCFastQC Report
Fri 27 May 2022
EGAF00004858399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128862127
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGCTTAAATCTCGTAT5881600.4564258046120874TruSeq Adapter, Index 23 (97% over 38bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1517790.11778402509218244No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGCTTAAATCGCGTAT1314890.10203851438832762TruSeq Adapter, Index 23 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)