FastQCFastQC Report
Fri 22 Jul 2022
EGAF00004858404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106930385
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACCGTGGAGGTATCGGAAGTGAGAATGCTGACATGAGTAGCGATAAAG5271930.4930245037460587No Hit
GTTAAGTCCCGCAACGAGCGCAACCCTCGTCTTTAGTTGCCATCATTCAG2371560.22178541674567057No Hit
CGGAAGTGAGAATGCTGACATGAGTAGCGATAAAGAGGGTGAGATGCCCT2356380.22036580154462174No Hit
CCGACCGTGGAGGTATCGGAAGTGAGAATGCTGACATGAGTAGCGATAAA2355410.22027508832031234No Hit
CGGGGCTCAAGATACGTACCGAAGCTTAGGGTGTGCATTTATGCACGCGG2247980.21022836493107175No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT2100220.19641002882389322No Hit
CTGCCCTTGGGTTCGGAATAACAGTGAGAAATTACTGCTAATACCGGATG2077490.19428434677383796No Hit
GCGAGATCTACCAAACCTAACCAAACTCCGAATACCACAGGGTTAGTCCG2052550.19195198820241788No Hit
GGGTCAGTGACTTAATCTATCAAGCGAGCTTAAGCCGTTAGGTGTAGGCG1754110.16404224112725302No Hit
GCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTCGGATGTTTACCTGT1718250.1606886573914421No Hit
CCGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTCGGAT1664920.15570130043018174No Hit
GGCCAATCAAGCCGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTA1628310.15227757760340993No Hit
GTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTCTTTAGTTGCCATCA1570010.1468254322660486No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC1567970.14663465393863492No Hit
CGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGG1431810.1339011357716518No Hit
GGGTGAGATGCCCTCTCGCCGAAATCCCAAGGGTTCCTGCTTAAAGCTAA1383390.12937295605921553No Hit
GAACTGTGTAGCATAGGTGGGAGGCTTTGAAGCGACGGCGCCAGCTGTCG1363180.1274829413547889No Hit
CGATAATTGAGAGGAGTTGACCCTAGTACGAGAGGACCGGGTTGAACATA1303330.12188584189610839No Hit
CTTGAGGCCTGACAGCGTACCTCTTGTATAATGGGTCAGTGACTTAATCT1237950.1157715835400761No Hit
CAAGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT1220750.11416306038737258No Hit
GGTTAAGTCCCGCAACGAGCGCAACCCTCGTCTTTAGTTGCCATCATTCA1206010.11278459345302086No Hit
GGGTAACCGACCGTGGAGGTATCGGAAGTGAGAATGCTGACATGAGTAGC1194260.11168574769463328No Hit
CGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGT1157640.10826108967998199No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1111060.10390498453736981No Hit
AGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTCGGATGTTTACCTG1102390.1030941766458617No Hit
GTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGAC1101930.10305115800340568No Hit
GGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGC1084580.10142860703250998No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC1078390.10084972573511262No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)