FastQCFastQC Report
Mon 4 Jul 2022
EGAF00004858491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121563454
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGTCAATCTCGTAT6478880.5329628096944333TruSeq Adapter, Index 18 (97% over 38bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1779180.14635813161412806No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1614620.1328211684409691No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC1283490.10558189634855225No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)