FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004858507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30764396
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA658700.2141111432839442No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT544330.17693505180469007No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG412540.13409657059413746No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC348340.11322829156145305No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTTAACATCTCGTAT340190.11057912529795808TruSeq Adapter, Index 11 (97% over 37bp)
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG338350.10998103131945124No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)