FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004858509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73785684
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1570560.21285429840292597No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1307480.17719968551080992No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG983260.13325891239281593No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCTTAACATCTCGTAT835240.11319811035430667TruSeq Adapter, Index 11 (97% over 37bp)
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC820890.11125328864607395No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG805570.1091770051220234No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)