FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004858513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51592120
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA989960.1918820160908294No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT762000.14769697387895672No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTATAGGATCTCGTAT687640.13328392010252726TruSeq Adapter, Index 22 (97% over 37bp)
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC566990.1098985659050258No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG517070.10022266966350675No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)