Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004858646 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40548322 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCGA | 3730 | 0.0 | 11.939267 | 4 |
GCGGTAT | 4855 | 0.0 | 11.896973 | 1 |
TTACGCG | 2045 | 0.0 | 11.413658 | 54 |
CGCGTAT | 685 | 0.0 | 11.175056 | 1 |
CGTATCG | 4060 | 0.0 | 10.283659 | 3 |
CCCGTAT | 4335 | 0.0 | 10.113444 | 1 |
CCGACAT | 7360 | 0.0 | 9.975214 | 1 |
ATCGAAG | 8655 | 0.0 | 9.765001 | 6 |
TACGCGA | 2585 | 0.0 | 9.693287 | 55 |
CGATCCA | 5565 | 0.0 | 9.065242 | 4 |
CCGGGAT | 14375 | 0.0 | 9.052767 | 1 |
CGTATCA | 3080 | 0.0 | 8.955625 | 50 |
GTCGCTA | 3810 | 0.0 | 8.801344 | 27 |
TTACACG | 3825 | 0.0 | 8.694988 | 32 |
TAACGCG | 1035 | 0.0 | 8.612534 | 33 |
CGCGTAA | 2805 | 0.0 | 8.559214 | 1 |
CGAAGAT | 11320 | 0.0 | 8.545077 | 1 |
TATATCG | 2290 | 0.0 | 8.536712 | 35 |
CCGGCAT | 7015 | 0.0 | 8.283358 | 1 |
CGAATCG | 2475 | 0.0 | 8.218708 | 52 |