FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004858690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37318837
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTCG47150.012.24822714
CGCGGGT26800.011.4929241
CGTATCA44550.011.23452450
CGCTCGT53400.010.81463615
CTCGGGT75350.010.498031
TCGGGTC58550.010.4017152
TTACACG40900.010.09765132
CGCAGAC85350.010.0882121
GCCGTAT47900.010.08345348
CCCGTAT43150.09.8149291
CGAAGAT129550.09.7533191
GTCGCCG49450.09.62591245
CGCCGTA54750.09.141479547
CGTATCG31550.09.0969773
TATATCG24700.09.06883835
CCGGCAT54050.09.0012271
GCGTCGT53000.08.98114412
GCGCTAA18900.08.88898542
CTCGGAT81900.08.8037151
CCGGGAT69300.08.7881741
Produced by FastQC (version 0.11.5)