FastQCFastQC Report
Fri 10 May 2024
EGAF00004858731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14760621
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC1372040.9295272875036897TruSeq Adapter, Index 8 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG538970.3651404639411851TruSeq Adapter, Index 8 (100% over 49bp)

[OK]Adapter Content

Adapter graph