FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004858768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32516535
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGAAA14800.012.06087243
TCGCGCG6209.094947E-1211.28886
CTCGGGT75150.09.871831
CGCGGGT22550.09.6213471
TCGGGTC61100.09.5646122
CTCGTTT51200.09.3635681
CCGGCAT51650.09.07873251
CTCGGAT75150.08.8473951
CTCGACT34250.08.4802431
CGACCGT13300.08.4195541
CTCGAAT55500.08.3228441
CGCGCTA17250.08.31956146
CCCGTAT34950.08.3103951
CGTTCGC21150.08.27417216
CTCGGAG119200.08.2493721
TCGCTCG41450.08.19034322
CCGCGAA23100.08.181746542
CGCGCGT7705.3880285E-88.1803631
CGTATCG24950.07.99463133
CGAAGAT101700.07.9828471
Produced by FastQC (version 0.11.5)