Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004858848 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31951537 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATCA | 2875 | 0.0 | 18.361965 | 50 |
CGTATCG | 3635 | 0.0 | 16.707466 | 3 |
GCGTCGT | 3475 | 0.0 | 15.481761 | 12 |
CGCGTAA | 2770 | 0.0 | 15.4469795 | 1 |
CCCGTAT | 3915 | 0.0 | 14.366715 | 1 |
GTATCGA | 3660 | 0.0 | 13.953493 | 4 |
GCGGTAT | 5185 | 0.0 | 13.5098 | 1 |
TTACGCG | 1970 | 0.0 | 12.600396 | 54 |
GCCGTAT | 4245 | 0.0 | 12.273283 | 48 |
AATCGGG | 5525 | 0.0 | 11.679602 | 5 |
ATCGAAG | 7125 | 0.0 | 11.672169 | 6 |
CCGTATC | 6200 | 0.0 | 11.632069 | 2 |
GATCGGA | 4805 | 0.0 | 11.274793 | 2 |
CAATCGG | 4630 | 0.0 | 11.253777 | 4 |
TCGATTG | 3750 | 0.0 | 11.238976 | 20 |
CGGTATA | 2335 | 0.0 | 11.231275 | 2 |
CGGAAAT | 5995 | 0.0 | 11.166427 | 1 |
TACTCGA | 4200 | 0.0 | 10.757399 | 17 |
CGAGCGA | 5730 | 0.0 | 10.652398 | 53 |
TACGCGA | 2445 | 0.0 | 10.57436 | 55 |