Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004858885 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 37425217 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC | 56985 | 0.15226364619342087 | TruSeq Adapter, Index 4 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 13270 | 0.0 | 36.77301 | 43 |
TATGCCG | 14050 | 0.0 | 34.78219 | 46 |
CGTATGC | 14215 | 0.0 | 34.3281 | 44 |
CTCGTAT | 14000 | 0.0 | 33.900696 | 42 |
GATCGGA | 14670 | 0.0 | 33.694714 | 1 |
AATCTCG | 14485 | 0.0 | 32.528664 | 39 |
ACACGTC | 16040 | 0.0 | 31.890175 | 13 |
ATCGGAA | 15780 | 0.0 | 31.152597 | 2 |
TCTCGTA | 15280 | 0.0 | 30.557522 | 41 |
ACGTCTG | 17225 | 0.0 | 29.979326 | 15 |
ATCTCGT | 16785 | 0.0 | 27.963076 | 40 |
CACGTCT | 18885 | 0.0 | 27.399925 | 14 |
ATGCCGT | 18655 | 0.0 | 26.027292 | 47 |
CACACGT | 20315 | 0.0 | 25.661577 | 12 |
TCGGAAG | 19545 | 0.0 | 25.276537 | 3 |
GCACACG | 21740 | 0.0 | 24.414055 | 11 |
CCGTCTT | 20580 | 0.0 | 23.629377 | 50 |
GCCGTCT | 20770 | 0.0 | 23.41391 | 49 |
GACCAAT | 21190 | 0.0 | 23.17783 | 35 |
ACCAATC | 21085 | 0.0 | 22.512995 | 36 |