EGAF00004858888 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004858888
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23536288
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACT	31757	0.1349278186942648	No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGG	31731	0.13481735097735037	No Hit
CTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAA	31417	0.13348324085769175	No Hit
CTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAATGTGAATTGCAGGACACATTGATCATCGA	30716	0.13050486125934557	No Hit
CTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGC	30071	0.12776441212819964	No Hit
CAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTA	26288	0.11169135931715315	No Hit
CTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGCGGG	24960	0.10604900823783259	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CATACGA	5650	59.355232	15
GCATACG	6505	58.554863	14
CGGCATA	6660	57.1921	12
ATACGAG	5620	53.226017	16
ACGGCAT	7700	46.821026	11
AGACGGC	8520	45.06224	9
GGCATAC	9065	42.551533	13
GACGGCA	8895	40.527233	10
ATACGCG	480	33.78297	16
GCGTCGA	7670	30.451498	11
ATTGGTC	6750	30.147097	23
GATTGGT	6630	29.808378	22
CGTCGAT	7950	29.510937	12
CTCGGCT	10425	28.358133	1
GGCTCGT	9020	27.956442	4
AGTGTCG	8185	27.52641	51
GCGTAGC	8270	27.363707	10
CAAGCAG	17695	27.175974	1
GTGCGTT	8285	27.02454	41
AGTGCGT	8365	26.56953	40