FastQCFastQC Report
Fri 10 May 2024
EGAF00004858977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004858977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12666483
Total Bases949.9 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GANCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT917210.7241236576877733TruSeq Adapter, Index 15 (97% over 40bp)
AGNTCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTA307090.2424429891075526TruSeq Adapter, Index 15 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)