Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004859143 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 41183907 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGATCGG | 13210 | 0.0 | 32.367622 | 1 |
TCGTATG | 14430 | 0.0 | 31.536594 | 46 |
CGTATGC | 15160 | 0.0 | 30.018373 | 47 |
TATGCCG | 15175 | 0.0 | 29.875458 | 49 |
GTTCCGT | 13905 | 0.0 | 28.333092 | 36 |
CGTATCT | 13830 | 0.0 | 28.26231 | 40 |
ACACGTC | 17125 | 0.0 | 27.678892 | 14 |
TATCTCG | 14225 | 0.0 | 27.57493 | 42 |
CTCGTAT | 16370 | 0.0 | 27.544456 | 45 |
GATCGGA | 15645 | 0.0 | 27.455545 | 2 |
CCGTATC | 15120 | 0.0 | 26.010756 | 39 |
TCCGTAT | 15025 | 0.0 | 25.92265 | 38 |
TTCCGTA | 15595 | 0.0 | 25.329056 | 37 |
ACGTCTG | 19290 | 0.0 | 25.001581 | 16 |
TCTCGTA | 18525 | 0.0 | 24.17262 | 44 |
CACGTCT | 19730 | 0.0 | 24.05935 | 15 |
CACACGT | 20775 | 0.0 | 22.94886 | 13 |
ATCTCGT | 19725 | 0.0 | 22.859371 | 43 |
ATCGGAA | 18790 | 0.0 | 22.823418 | 3 |
ATGCCGT | 20245 | 0.0 | 22.53002 | 50 |