FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004859318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004859318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32185915
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTTC25050.012.99278714
CGTTCGC25300.012.72563816
CGACCTA16700.012.5762444
CGTATCA31050.012.40036450
TCGCTCG57050.011.71668714
GTTCGCA30550.010.9966617
CCGCGTT30800.010.56746513
CGCGGGT29750.010.2359351
GCCGTAT38100.09.92121948
TAAGTCG30850.09.75510520
CGAAGAT112900.09.6108761
CGCAGAC94500.09.5561531
CGCGCGT10700.09.4865761
TTCGCAC34700.09.37880518
CCGGGAT88850.09.3759391
CCGGCAT61450.09.2845521
CGCTCGT70450.09.23952415
CGCCAAC82050.09.2144711
CGCCAAT66600.09.1972721
CGCGAAC8001.2914825E-109.1880761
Produced by FastQC (version 0.11.5)