EGAF00004859327 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004859327
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32857069
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	443157	1.3487417273890132	TruSeq Adapter, Index 21 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	389617	1.185793535022859	TruSeq Adapter, Index 21 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAG	45424	0.138247267277553	TruSeq Adapter, Index 21 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAGAA	37444	0.11396025616283668	TruSeq Adapter, Index 21 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	94100	57.19937	1
CGTTTCG	170085	34.13987	33
TCGTATG	169715	33.979633	45
TATGCCG	169600	33.970127	48
CGTATGC	170260	33.870865	46
ACACGTC	172975	33.86822	13
CTCGTAT	169835	33.77781	44
ACGTCTG	173445	33.742638	15
GTTTCGG	172675	33.619804	34
AGTCACG	171960	33.61071	28
CGGAATC	170030	33.564674	38
GTCACGT	171795	33.51642	29
GCCGTCT	169485	33.490368	51
AATCTCG	171000	33.47266	41
CACGTCT	174750	33.468937	14
TTCGGAA	174160	33.432293	36
TTTCGGA	173660	33.39952	35
ACGTTTC	173770	33.39563	32
TGCCGTC	170585	33.39374	50
TCGGAAT	172610	33.38273	37