EGAF00004896721 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004896721
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28031121
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	1060	0.0	11.643117	1
ATCGGAA	1405	0.0	9.707593	2
CTCGTAT	1420	0.0	7.901645	42
TCGGAAG	1820	0.0	7.6149206	3
TCTCGTA	1555	0.0	7.498577	41
TCGTATG	1710	0.0	6.1752496	43
GCGGATC	5720	0.0	5.961175	3
CGGATCA	5805	0.0	5.684367	4
GGCGGAT	6520	0.0	5.6008854	2
CGTCTGA	2605	0.0	5.4046125	16
CGAGGCG	4005	0.0	5.383221	44
GGTGATC	10530	0.0	5.2855277	2
AGGTGAT	15510	0.0	5.2432632	1
CGTATGC	2275	0.0	5.22193	44
CGGAAGA	2465	0.0	5.176118	4
ATCTCGT	2555	0.0	5.08036	40
ATATAAC	6600	0.0	5.0755925	1