EGAF00004898186 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004898186
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6824738
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	12897	0.18897428736458455	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	11225	0.16447517838780037	No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA	10606	0.15540523313862012	No Hit
GTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCC	10116	0.14822547034039987	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9881	0.14478211471268201	No Hit
GGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAG	8389	0.12292046962095834	No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG	7894	0.11566744393704197	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGAT	7242	0.1061139636422673	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCAGCGC	1520	42.662724	8
GGTATCA	2980	42.565643	1
CAACGCA	5955	41.56169	5
GCTCTAG	1470	40.51152	1
TCAACGC	6155	39.93438	4
TGCAGCG	1650	39.6428	7
ACGCAGA	6365	39.051113	7
ATCAACG	6295	38.954277	3
GTACTTT	5490	38.8335	1
CGCAGAG	6560	37.908634	8
AACGCAG	6955	35.737583	6
GTATCAA	7265	35.493446	1
GCAGAGT	7590	32.6873	9
TGGTCCT	3495	32.34358	5
CTAGCCT	5630	26.63895	4
CATGCAG	2735	25.23378	5
CCAGTAC	2645	24.977613	3
GTCGTGC	1035	24.741383	1
ACGGGAC	955	24.306078	3
GCCTTTC	5155	24.108667	7