FastQCFastQC Report
Sat 4 Jun 2022
EGAF00004912533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004912533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47895809
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTGG1225830.255936798144489No Hit
GCCGGCGGGGTCCTCTGACGCGGCAGACAGCCCTCGCTGTCGCCTCCAGT906150.18919191864991777No Hit
GTGCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTT899060.18771162211708334No Hit
GAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCC855910.17870248313375392No Hit
GTCGTCCGGCCCCGCCGCGCCGGCTCCCCGTCTTCGGGGCCGGCCGGATT831870.17368325483342392No Hit
GGCCGGCGGGGTCCTCTGACGCGGCAGACAGCCCTCGCTGTCGCCTCCAG823560.17194823872794382No Hit
GGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGCCCGCCCCCGGTG783700.16362600744461794No Hit
CGTCGTCCGGCCCCGCCGCGCCGGCTCCCCGTCTTCGGGGCCGGCCGGAT760960.1588782016397301No Hit
GGGCCGGCGGGGTCCTCTGACGCGGCAGACAGCCCTCGCTGTCGCCTCCA696590.14543861238464517No Hit
CGACTTGCGGGCGGCCCCCCTCCGCGGCGGTGGGGGTGCCGTCCCGCCGG611760.1277272506243709No Hit
GATCAATCGCCCCCGGGGGTGCCTCCGGGCTCCTCGGGGTGCGCGGCTGG607280.12679188694777033No Hit
CCGGCGGGGTCCTCTGACGCGGCAGACAGCCCTCGCTGTCGCCTCCAGTG589360.12305043224136791No Hit
GCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCGC571490.11931941686171331No Hit
GCGGGGTCCTCTGACGCGGCAGACAGCCCTCGCTGTCGCCTCCAGTGGTT562930.11753220412249431No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG559490.11681397844224742No Hit
GGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCGCCG529240.11049818575984384No Hit
GCCGGCGGGGAGAGAGGGTCGGGGGAGCGCGTCCCGGTCGCCGCGGTTCG479290.10006929833881707No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)