FastQCFastQC Report
Wed 11 May 2022
EGAF00004913331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28212980
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG946300.3354129907581546No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA492010.174391361706562No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG491710.17428502767166035No Hit
GGGGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA291010.10314755832244592No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)