EGAF00004913346 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913346
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10609722
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC	77550	0.7309333835514258	No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC	63531	0.5987998554533285	No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC	33576	0.3164644653271782	No Hit
AGCCCTTAGAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGCCGAC	18325	0.17271894588755482	No Hit
AGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAA	16321	0.15383060932228007	No Hit
CTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGAAGCCTTCT	15975	0.1505694494162995	No Hit
CCCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGG	15403	0.1451781677220195	No Hit
CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC	14128	0.13316088772165757	No Hit
GAACCCGACTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGT	14018	0.13212410278044986	No Hit
GTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGC	13534	0.127562249039136	No Hit
AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG	12513	0.1179389997211991	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCGACA	7930	78.45527	4
GCGACAT	8270	75.91462	5
CTGCGAC	8560	72.90304	3
GCTGCGA	9190	67.70213	2
GGCTGCG	10595	59.322586	1
CGACATC	10975	57.46552	6
GACATCT	14230	44.7546	7
ACATCTG	14385	44.239346	8
CATCTGT	16070	39.512028	9
GTATTCG	2660	36.077045	1
ACCCGAC	4235	35.21278	3
TATTCGT	2675	35.155067	2
ATTCGTA	2710	34.34874	3
TTCGTAC	2835	33.00177	4
CCCGACT	4675	32.711334	4
TGGCTAG	26175	32.38736	4
CCGACTC	4720	31.995182	5
AACCCGA	4735	31.596365	2
TGATCGC	9995	31.441711	24-25
CTAGGCG	27030	31.291882	7