FastQCFastQC Report
Thu 16 Jun 2022
EGAF00004913358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32624580
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC783330.24010424042240544No Hit
CCCCCCCACCCCCACCACCACGCCCGCGGTCGGCGGGAGAGGCCGGGAGG536930.1645783639207003No Hit
CAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACG378870.11613023064204965No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG364530.11173477175798124TruSeq Adapter, Index 11 (100% over 49bp)
GGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGG328980.10083807975458994No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)