EGAF00004913416 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913416
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12378787
Sequences flagged as poor quality	0
Sequence length	101
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC	76110	0.6148421489116825	No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC	68752	0.5554017530150571	No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC	31115	0.2513574229849823	No Hit
GGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGG	31004	0.2504607276948864	No Hit
AGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAA	17836	0.14408519994729693	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCTCGTATG	17758	0.14345508974344579	TruSeq Adapter, Index 20 (97% over 49bp)
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG	15677	0.1266440726381349	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCGACA	9770	70.58878	4
GCGACAT	10205	67.57985	5
CTGCGAC	11070	62.350685	3
GCTGCGA	11750	58.748955	2
CGACATC	12085	57.145412	6
GGCTGCG	15000	46.366882	1
ACATCTG	16465	42.087894	8
GACATCT	18105	38.275455	7
CATCTGT	18745	37.09533	9
CGCACTA	8785	36.548416	7
GTCCGCA	9345	34.358246	4
GCGCGGT	5275	33.04511	6
TCCGCAC	10095	31.852676	5
GCACTAA	10540	30.778233	8
TCGACCG	1590	30.772541	3
CAAGCTT	16315	30.517336	2
AAGCTTG	16485	30.199211	3
TTGGGCT	16680	29.92749	7
CCGCACT	10945	29.899715	6
GTGTCCG	10775	29.717688	2