FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004913459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9767410
Sequences flagged as poor quality0
Sequence length125
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG163670.16756745135097226No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA123650.12659446055812135No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC112460.11513799461679197No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)