FastQCFastQC Report
Sun 5 Jun 2022
EGAF00004913478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25845852
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC1198720.46379589266393695No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC698120.27010910686945044No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTCATTCGGCTGATC683880.26459951871580784No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC566960.21936208564530976No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT463720.17941757153140087No Hit
GAACCCGACTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGT420370.16264505422378803No Hit
AGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAA362630.1403049123704647No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT354970.13734118728219907No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)