FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20587897
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGAT110150.037.3506668
TCGGGGA114250.036.176437
TGTCGGG28850.033.8998225
GTTCCGT30500.031.9143471
GGGCGAC30050.030.9701671
CCCCGAA33900.030.8052712
CTGTCGG32050.030.3660344
ATCGGGG80100.029.443526
GTCCCGT20700.029.1316661
TATCGGG68550.028.3264275
TCTATCG64550.028.0207233
CTATCGG66050.027.8882454
CCGATCG24000.027.68495886-87
GACCCGT13050.027.6525421
GTCGGGG38800.027.0287766
GCCCCGT28500.026.9899521
CCCCCGT32400.026.672171
CCCCGTT38750.026.459652
GGTCCGT22500.026.1680361
GCGCGTT3300.025.899451
Produced by FastQC (version 0.11.5)