FastQCFastQC Report
Sun 5 Jun 2022
EGAF00004913512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20614548
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC2924751.4187795919658293No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC2364161.1468405710375023No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG364020.17658403182063465No Hit
GGCTGGCTAGGCGGGGGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC320200.15532719902468878No Hit
TGGGGGGGATTCTTCTCTAATCTTTCAGAAACTTTGTCTGCGAACACTCT286840.13914445274279116No Hit
GGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGG235960.11446285409701924No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG211380.10253923588331891No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)