FastQCFastQC Report
Wed 11 May 2022
EGAF00004913513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20614548
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG907460.4402036852808997No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG464850.2254960914010824No Hit
TCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGA253750.1230926819254053No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA235910.11443859938136892No Hit
CCTCTCTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG222210.10779280729317955No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG211160.10243251513445746No Hit

[FAIL]Adapter Content

Adapter graph