FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20827803
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGACC34950.036.008269
CCCCCGT46250.035.7249641
CGGGGAT117700.035.2645538
TTCCGAC38700.032.64188
TCGGGGA129500.032.1250657
CCCCGTA36250.030.3875542
TGTCGGG31750.030.3628235
CCCGTTA31450.030.1961983
CCGTTAT23050.029.4615064
TCCCCGT55250.028.7883531
GTTCCGT26950.028.7166081
CCCCGAA48250.027.8486982
GTCCCGT33500.027.7789331
CCGATCG36150.027.6764286-87
TCTATCG65600.027.5780813
ATCGGGG90550.027.534386
CCCCGTT62350.027.4907462
CCGTTAA27450.027.3340874
TATCGGG70750.027.1843175
CCCGTTT74100.026.7855763
Produced by FastQC (version 0.11.5)