FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14005624
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCGAC24500.033.9163781
GTTCCGT18350.033.121611
TCGATCG9250.032.836866
GTCCCGT15650.029.4303151
CCGATCG14450.027.09370686-87
GGCGACA29700.027.0190052
GGTCCGA9950.026.724061
GGTCCGT17850.026.6010821
GGCCCGT18550.026.3651851
CATCGCG9250.026.1682788
ATCGCGC9200.025.2788019
GGGCCGT15800.025.244091
GTCCGTT17200.025.1218722
GCCCCGT20150.024.7429681
CGCGCTA1551.4169473E-624.5073171
CCCGTTA14800.024.0650483
GCCCGTT22250.023.474792
CCCCGAA23800.023.1430242
TATCGGG29150.023.1338465
CCCCGTT26700.022.9412732
Produced by FastQC (version 0.11.5)