FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004913566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10616657
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC238770.22490130367779612No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC192500.18131884641276438No Hit
GGCAGTATGATGGCCTAGATGCAGAGAAAACAGCTCCTTGGTGAATTGAT119030.11211627162863037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)