FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22965634
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGACC48600.054.728229
TTCCGAC52500.050.5670478
GGGCGAC31100.039.7008361
GTTCCGT32200.039.2294731
TTTCCGA69950.038.0200357
GTTTCCG62350.036.8656656
GCTCCGT42450.035.574281
GCCCCGA21150.034.1287161
ATAGCGC91900.033.86977894-95
GGCCCGA19300.033.7093161
GCCCCGT25950.033.6718641
CCGATCG96800.033.56441586-87
GGTCCGT24000.032.846081
GTCCGGT14100.032.6684072
GGTCCGG20200.032.4425051
CCCCGTT36050.032.4044882
CGATCGG98300.032.2549386-87
CGGGGAT68200.031.6841558
GATCGGC104000.031.34773688-89
GTCCCGT21000.030.9804691
Produced by FastQC (version 0.11.5)