EGAF00004913690 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913690
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8748749
Sequences flagged as poor quality	0
Sequence length	125
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67782	0.7747621974295982	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34635	0.3958851716971192	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28677	0.32778400660483004	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	18252	0.208624113001756	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12571	0.14368911486659408	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	12360	0.1412773414804791	No Hit
ATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACG	10763	0.12302330310310651	No Hit
AAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTC	10666	0.1219145731578309	No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA	10487	0.11986856635160067	No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAG	10391	0.11877126661194645	No Hit
GTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCC	9080	0.10378626704229371	No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG	9060	0.10355766292986575	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	7550	88.43299	1
GTATCAA	26355	70.988495	1
ATCAACG	34705	54.130684	3
CAACGCA	35260	53.295532	5
TCAACGC	35290	53.216503	4
AACGCAG	37395	50.26432	6
ACGCAGA	40235	46.72985	7
CGCAGAG	40625	46.29589	8
GCAGAGT	43475	43.302025	9
TATCAAC	43715	42.98828	2
GCAGCGC	1635	39.302242	8
GCTCTAG	1495	37.415802	1
TGCAGCG	1855	34.320312	7
AGAGTAC	48720	30.598381	10-11
TGGTCCT	3860	29.598854	5
TGGTATC	2320	27.445063	2
CAGAGTA	46960	27.259922	10-11
AATGCGT	4410	26.849625	6
GTGGTAT	2565	26.679575	1
AAATGCG	4490	26.108435	5