FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13330457
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAC42450.048.308978
TCCGACC46000.044.4928479
TTTCCGA51250.040.379037
GTAGCAA122900.036.5294729
AGTACGA39700.036.2299469
TCGCGCG49950.035.9562727
TCCGTTT54650.035.5995673
GTTTCCG50050.035.4996836
CAGTACG41300.035.0432668
TAGTAGC127500.034.9017377
CCGTTTC58150.034.272884
CTCCGTT48750.032.752392
CGTTTCC54100.032.6621325
GCCCCGT36250.032.347871
AGTAGCA139950.031.8665078
GCTCCGT45900.030.7795961
ATACCGG16650.030.3059489
CCCGTTA16200.030.2414913
CGAGAAC96550.030.09007824-25
TCAGTCG81550.029.88746584-85
Produced by FastQC (version 0.11.5)