FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9350455
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGACC14400.038.1863679
CCCGTTA11950.038.1157883
GCCCCGT15350.036.779451
CCCCGTT23700.035.8320242
CCCCCGT17700.035.380771
GTCCCGT11050.035.206121
TTCCGAC16050.034.2606668
CCCGTTT30050.032.0518533
CCGTTAT10550.031.9167654
CGCCCGT6950.030.0354731
CCGTAAA12650.029.242674
CTCCGTT24750.028.7529682
CCCCCGA18900.028.616051
GCCCGTT14750.028.3046152
TCCCGTT20650.028.2586672
CCCCGTA12450.028.1986942
CCGTTAA12650.028.1179524
GGGCCGT10350.027.961221
CCCCGAA17750.027.7972372
GCTCCGT19300.027.7771571
Produced by FastQC (version 0.11.5)