FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17341399
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGTGC109300.033.5555536
GTTCCGT23100.033.331181
GCCCCGT25400.032.745531
CCCCGTT34750.032.687712
CCCCCGT28700.032.4580041
TCCGACC21850.032.181229
CCCCGAA34650.031.5475732
CGGTGTG43350.031.2387145
CGGGGAT56800.031.1998718
GTGCTCT143050.030.4892759
TCGGGGA58450.030.481697
CCCCGTA20400.030.2868822
TCCGATC64250.030.27281816-17
CCGATCT65350.030.23568316-17
GTCCCGT19400.030.1335981
CCCGTTA20350.030.128533
TGTGCTC147500.030.020388
GTGTGCT150700.029.855827
GGTCCGT17500.029.6030251
CCCCCGA32950.028.7041911
Produced by FastQC (version 0.11.5)