EGAF00004913830 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913830
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7194759
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64894	0.9019621088072582	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33107	0.4601543985003528	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23735	0.32989291232687573	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18100	0.251572012349545	No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG	14973	0.20810981993976452	No Hit
GTATATAGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTA	11641	0.16179833125751675	No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC	11420	0.15872665088573504	No Hit
GTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCC	11374	0.1580872966002058	No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG	8989	0.12493816679613591	No Hit
GGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAG	8757	0.12171359735607544	No Hit
GCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAAC	7834	0.10888481462686937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	8530	0.0	89.08695	1
GCGTAAG	510	0.0	68.842094	1
GTATCAA	24615	0.0	68.60959	1
GCGTACT	505	0.0	63.631863	1
ATCAACG	30040	0.0	56.41651	3
CAACGCA	30435	0.0	55.860283	5
TCAACGC	30480	0.0	55.855904	4
CGTAACG	65	5.480997E-7	54.929684	2
AACGCAG	31750	0.0	53.652817	6
CGTACTT	550	0.0	49.769623	2
ACGCAGA	34260	0.0	49.669586	7
CGCAGAG	34660	0.0	49.1307	8
GCGTAAC	185	0.0	48.249382	1
GCAGAGT	36670	0.0	46.421463	9
TATCAAC	36480	0.0	46.326847	2
GCTCTAG	1430	0.0	45.77505	1
GCAGCGC	1440	0.0	45.037666	8
TCTGTCG	1185	0.0	44.687237	8
GCGTATG	380	0.0	43.847683	1
GTACTTT	63580	0.0	41.21915	1