EGAF00004913870 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004913870
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17951224
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG	79643	0.4436633401711214	No Hit
TGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAG	73180	0.40766022417190045	No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC	66641	0.37123373871330445	No Hit
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC	60720	0.33824991543752114	No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC	37969	0.21151203951329448	No Hit
AACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGA	27420	0.15274724442188456	No Hit
GGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCC	26212	0.14601789827813413	No Hit
CAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTG	25960	0.14461409428125904	No Hit
AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG	24350	0.13564534652344598	No Hit
CGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTGAAGG	24115	0.13433624358985216	No Hit
AACACGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAA	22120	0.12322279528125771	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCGACA	10115	68.84427	4
GCGACAT	10280	67.69329	5
GCTGCGA	11395	61.821747	2
CAGACGT	13660	59.352406	6
TCAGACG	13945	58.10584	5
CTGCGAC	12035	58.09836	3
AGACGTG	14290	56.768967	7
GGCTGCG	14445	48.91899	1
ACGTGGC	17680	45.83027	9
GACGTGG	18440	44.327515	8
AGATCAG	19470	41.74068	2
CGACATC	17065	40.8339	6
GATCAGA	19965	40.60932	3
GACATCT	18190	38.647686	7
GGTAGTA	22490	37.06294	5
ATCAGAC	22355	36.288666	4
GTAGCAA	23215	36.273216	9
GTAGTAG	23435	35.689636	6
ACATCTG	20105	35.013718	8
CAGATCA	23675	34.50404	1