FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18030981
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTGTG47450.037.1866235
GGTGTGC163350.036.5238766
GTGCTCT206150.036.0661359
TGTGCTC218950.034.107968
GTGTGCT224250.033.9399457
CCGATCT110700.032.01971416-17
TTCCGAT120800.030.68327114-15
TCCGATC111350.030.55180416-17
TCCGACC20250.029.8143189
CTTCCGA123800.028.4225814-15
GTTCCGT21750.028.2084671
TCTTCCG136200.027.98045212-13
GGTCCGT20450.026.7456761
TTCCGAC22750.026.7456468
GTCCCGT17250.026.7443281
CCGGTGT33450.026.5887644
CCGATCG21450.026.1248286-87
GACCCGT11600.025.830431
CGATCTA32500.025.60107818-19
GCTCCGT28000.023.7803941
Produced by FastQC (version 0.11.5)