FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004913885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004913885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15226054
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGTGC118500.041.2124336
TCCGACC31050.041.0074129
GTGTGCT155600.040.0296947
CGGTGTG40450.039.4689525
TTCCGAC33300.038.3793148
TGTGCTC167000.037.154888
GTGCTCT168150.036.816019
CCCCCGT28900.034.5372351
CCCCGTT39950.033.5500142
GTCCCGT16550.033.026761
CCGATCT93550.032.36777516-17
TCCGATC90550.032.2599116-17
CGGGGAT86750.032.203058
TCGGGGA90250.031.112117
GCCCCGT28400.030.7939641
CCCCGAA36650.029.697642
CCCGTTA19950.029.5424393
TTTCCGA44500.029.1468627
CCGTTTC53350.029.1269654
GACCCGT9000.029.0461
Produced by FastQC (version 0.11.5)